Learning in the Brain and NeuroRobots - from Molecules to Behaviour
with the EBRAINS Training on the Brain Function, Dysfunction and Neurorobotic Systems
8th Baltic-Nordic Summer School on Neuroscience and Neuroinformatics
21–25 September 2021
Virtual Event
This summer school was the eighth in the series of the Baltic-Nordic Courses on Neuroinformatics BNNI 2013-2019:
1st BNNI 2013 Kaunas, Lithuania
2nd BNNI 2014 Tampere, Finland
3rd BNNI 2015 Tartu, Estonia
4th BNNI 2016 Warsaw, Poland
5th BNNI 2017 Kaunas, Lithuania
6th BNNI 2018 Ventspils, Latvia
7th BNNI 2019 Frankfurt, Germany
The 8th Baltic-Nordic Summer School on Neuroscience and Neuroinformatics 2021 “Learning in the Brain and NeuroRobots – from Molecules to Behaviour with the EBRAINS Training on the Brain Function, Dysfunction and Neurorobotic Systems” offered interdisciplinary courses and covered modelling at different levels of organization of the brain, from single neurons to microcircuits, neural networks and neurorobotics.
The course offered lectures on the latest achievements in understanding learning, neural and network dynamics and function in health and disease, neurorobotic theory and applications, and hands-on tutorials on the EBRAINS services and tools. The summer school targeted advanced master students, doctoral students and postdoctoral researchers in biomedical and technology sciences, ranging from medicine, biology, psychology, to mathematics, informatics, information technology, physics and chemistry, and anyone who was eager to get an introduction to neuroinformatics, computational neuroscience and the EBRAINS Infrastructure.
Sessions:
Session 1 “Synapses, neurons and networks” will introduce the motivation behind and basic concepts of theoretical and computational modelling of the neurons, neural networks and brain functions.
Session 2 “Networks: Functions and Dynamics” will focus on complex dynamics, both at single neuron and population level. The goal of this session is to learn about theoretical methods to study the origin of the dynamical state of biological neural networks, and then to discuss how these insights help in mechanistic understanding of essential brain functions such as working memory. The tools to numerically simulate the activity of biological neural networks will also be discussed.
Session 3 “Learning and Plasticity” will introduce synaptic plasticity, the biological basis of learning and memory. At the most fundamental level, perception, cognition, learning and memory ultimately depend on complex molecular processes. Modelling of these processes requires simulating phenomena that occur on a wide range of spatial and temporal scales. The goal of this session is to inform and teach students about the modelling of synaptic plasticity and learning. Also, data mining approaches relevant for better understanding of synapses will be exemplified. Some EBRAINS resources providing modeling of synaptic plasticity will be used in the tutorials.
Session 4 “Brain function and dysfunction: models and experiments” will be devoted to the computational perspective on brain disease. It is becoming increasingly clear that the classical approach of relating behavioral deficits to the morphology, genetics or chemistry of the brain is highly simplified. The genetic, chemical, morphological changes manifest in behavioural changes via multi-scale interactions between neurons and networks. Therefore, a number of diseases can be understood as diseases of brain dynamics. In addition, psychiatric diseases are better understood in the computational framework of decision making and reinforcement learning. In this session we will provide a pedagogical lecture on how our understanding of brain dynamics provides a bottom-up view of brain dysfunction such as Parkinson’s diseases, while the decision making, and reinforcement learning provides a top-down framework for understanding psychiatric disorders.
Session 5 “Artificial systems and embodied brains” will discuss technical applications of neuronal computation. We introduce concepts of neurocognitive systems, give an overview of available neurocomputing hardware and software environments, and introduce closed-loop neuronal control systems. The second part of the day is dedicated to hands-on sessions that allow students (remote) access to simulated neurorobotics and neurocomputing environments. We will prepare a virtual environment, where participating teams can develop neuronal models to train a virtual robot in a competitive task (e.g. collecting items in an arena full of obstacles). We will organize a final competition.
Preliminary Scientific Programme
All times in the programme are CEST = UTC+2
Download the preliminary scientific programme .
13.00 – 13.15 | Welcome & Introduction BNNI 2021 Organizers |
Session 1 - Synapses, neurons and circuits Chair: Marja-Leena Linne | Tampere University |
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13.15 – 13.45 | Why to model the brain Gaute Einevoll | Oslo University |
13.45 – 14.45 | Synapses, neurons, circuits: introduction to computational neuroscience Bruce Graham | University of Stirling |
14.45 – 15.00 | Coffee break |
Tutorials: Hands-on NEURON and Python |
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15.00 – 15.30 | Modeling in NEURON and Python: useful tips Arnd Roth | University College London |
15.30 – 16.30 | Simulating synapses, neurons and circuits Bruce Graham | University of Stirling Arnd Roth | University College London Ausra Saudargiene | Lithuanian University of Health Sciences |
16.30 – 17.00 | Coffee break |
Tutorials: Hands-on EBRAINS |
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17.00 – 17.45 | From modeling single neurons to large-scale networks in EBRAINS Jeanette Hellgren Kotaleski | KTH Stockholm |
17.45 – 18.30 | Circuit building (theory and practice) Johannes Hjorth, Alex Kozlov | KTH Stockholm |
18.30 – 19.00 | Break |
19.00 – 20.00 |
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20.00 – 21.00 | Virtual Tour in Stockholm, Sweden Hangout |
13.00 – 13.15 | Introduction Day 2 |
Session 2 - Biological Neuronal Networks: Functions and Dynamics Chair: Arvind Kumar | KTH Royal Institute of Technology |
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13.15 – 14.00 | Dynamics of spiking neuronal networks Nicolas Brunel | Duke University |
14.00 – 14.30 | Computational models of working memory Pawel Herman | KTH Royal Institute of Technology |
14.30 – 15.00 | Statistical mechanics of memory in biological neuronal networks Yasser Roudi | Norwegian University of Science and Technology |
15.00 – 15.30 | Coffee break |
Tutorial: Hands-on EBRAINS |
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15.30 – 17.00 | Simulation of network with spiking neurons (NEST) Sebastian Spreizer | Forschungszentrum Jülich |
17.00 – 17.30 | Coffee break |
17.30 – 18.30 | Models of mesoscopic brain activity: The Virtual Brain Viktor Jirsa | Aix-Marseille-University |
18.30 – 18.45 | Coffee break |
18.45 – 19.45 |
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19.45 – 21.00 |
Understanding the Brain - an evolutionary perspective |
13.00 – 13.15 | Introduction Day 3 |
Session 3 - Synaptic Plasticity and Learning Chair: Jeanette Hellgren Kotaleski | KTH Royal Institute of Technology |
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13.15 – 13.45 | How we learn and forget Ausra Saudargiene | Lithuanian University of Health Sciences |
13.45 – 14.15 | Astrocyte-neuron interactions Marja-Leena Linne | Tampere University |
14.15 – 14.45 | Learning in large networks Abigail Morrison | Forschungszentrum Jülich |
14.45 – 15.00 | Coffee break |
Tutorials: Hands-on EBRAINS |
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15.00 – 16.30 | STEPS simulator Andrii Stepaniuk | École Polytechnique Fédérale de Lausanne |
16.30 – 17.00 | Coffee break |
Tutorials: Hands-on EBRAINS |
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17.00 – 18.30 | STDP in Nest Abigail Morrison’s lab | Forschungszentrum Jülich |
18.30 – 19.00 | Coffee break |
19.00 – 19.30 |
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20.00 – 21.00 |
Seth Grant | University of Edinburgh
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13.00 – 13.15 | Introduction Day 4 |
Session 4 - Brain dysfunction: how modeling can help Chair: Arvind Kumar | KTH Royal Institute of Technology |
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13.15 – 13.45 | Free energy principle and computational models of brain disorders Yukie Nagai | University of Tokio |
13.45 – 14.15 | A computational framework to understand psychiatric disorders Tobias Hauser | University College London |
14.15 – 14.45 | Striatal dopamine computations in learning about agency Michael J. Frank | Brown University |
14.45 – 15.00 | Coffee break |
Brain dysfunction: a clinical view, or bottom up modeling |
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15.00 – 16.30 | Modelling of disease related brain activity with The Virtual Brain Jan Fousek | Aix-Marseille University |
16.30 – 17.15 | Excitatory-Inhibitory balance and changes in emergent patterns of circuit activity in brain disorders Vikaas Sohal | University of California, San Francisco |
17.15 – 17.45 | Coffee break |
Tutorials: Hands-on EBRAINS |
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17.45 – 18.30 | The role of signaling molecules in synaptic plasticity and relapse to alcohol use Kim T ‘Avrama’ Blackwell | George Mason University |
18.30 – 19.00 |
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19.00 – 19.30 |
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20.00 – 21.00 | Evening Discussion Ask anything you ever wanted to know about neuroscience Kim T ‘Avrama’ Blackwell | George Mason University Michael Frank | Brown University Peter Uhlhass | University of Glasgow |
21.00 – 22.00 | Brain Quiz |
13.00 – 13.15 | Introduction Day 5 |
Session 5 - Artificial systems and embodied brains Chair: Pawel Herman | KTH Royal Institute of Technology |
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13.15 – 13.45 | Neuro-Cognitive Systems Rainer Goebel | Maastricht University |
13.45 – 14.15 | Neurocomputing Hardware Yulia Sandamirskaya | Intel |
14.15 – 14.45 | Neuromorphic Technical System Jörg Conradt | KTH Royal Institute of Technology |
14.45 – 15.00 | Coffee break |
Tutorial: Hands-on neurorobotics platform and neurocomputing |
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15.00 – 15.30 | Hands-on EBRAINS: the Neurorobotics Platform KTH NCS Neuro Computing Systems Team | KTH Royal Institute of Technology |
15.30 – 16.30 | Hands-on EBRAINS: the SpiNNaker neurocomputing platform KTH NCS Neuro Computing Systems Team | KTH Royal Institute of Technology |
16.30 – 17.00 | Coffee break |
Hands-On Competition / Neuromorphic Robotics Olympics |
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17.00 – 18.00 | Train your neuronal network / neurorobot KTH NCS Neuro Computing Systems Team | KTH Royal Institute of Technology |
18.00 – 18.30 |
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18.30 – 19.00 |
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19.00 – 19.45 | Evening Lecture Spaun 2.0: Cognitive Flexibility in a Large-scale Brain Model Speaker: Chris Eliasmith | University of Waterloo |
19.45 – 21.00 | Evening Discussion Closing the BNNI summer school, round table debate, feedback Jeanette Hellgren Kotaleski | KTH Royal Institute of Technology, Stockholm, Sweden Jörg Conradt | KTH Royal Institute of Technology, Stockholm, Sweden Pawel Herman | KTH Royal Institute of Technology, Stockholm, Sweden Erik Fransén | KTH Royal Institute of Technology, Stockholm, Sweden |
21.00 | Farewell |
Speakers
Kim T ‘Avrama’ Blackwell | George Mason University, US
Nicolas Brunel | Duke University, NC, US
Jörg Conradt | KTH Royal Institute of Technology, Stockholm, Sweden
Gaute Einevoll | Oslo University, Norway
Jan Fousek | Aix-Marseille University, France
Michael Frank | Brown University, Providence RI, US
Erik Fransén | KTH Royal Institute of Technology, Stockholm, Sweden
Bruce Graham | University of Stirling, UK
Seth Grant | University of Edinburgh, UK
Rainer Goebel | Maastricht University, The Netherlands
Sten Grillner | KTH Royal Institute of Technology, Stockholm, Sweden
Johannes Hjorth | KTH Royal Institute of Technology, Stockholm, Sweden
Pawel Herman | KTH Royal Institute of Technology, Stockholm, Sweden
Viktor Jirsa | Aix-Marseille University, France
Andrii Stepaniuk | École Polytechnique Fédérale de Lausanne, Switzerland
Alex Kozlov | KTH Royal Institute of Technology, Stockholm, Sweden
Arvind Kumar | KTH Royal Institute of Technology, Stockholm, Sweden
Jeanette Hellgren Kotaleski | KTH Royal Institute of Technology, Stockholm, Sweden
Marja-Leena Linne | Tampere University, Finland
Abigail Morrison | Forschungszentrum Jülich, Germany
Yukie Nagai | IRCN, Japan
Yasser Roudi | NNTU, Trondheim, Norway
Arnd Roth | University College London, UK
Yulia Sandamirskaya | Intel, München, Germany
Ausra Saudargiene | Lithuanian University of Health Sciences, Kaunas, Lithuania
Sebastian Spreizer | Forschungszentrum Jülich, Germany
Vikaas Sohal | University of California, San Francisco, USA
Peter Uhlhass | University of Glasgow, UK
Scientific Committee
Jeanette Hellgren Kotaleski | KTH Royal Institute of Technology, Stockholm, Sweden
Arvind Kumar | KTH Royal Institute of Technology, Stockholm, Sweden
Jörg Conradt | KTH Royal Institute of Technology, Stockholm, Sweden
Pawel Herman | KTH Royal Institute of Technology, Stockholm, Sweden
Erik Fransén | KTH Royal Institute of Technology, Stockholm, Sweden
Marja-Leena Linne | Tampere University, Finland
Ausra Saudargiene | Lithuanian University of Health Sciences, Lithuania
Local Organisers
Jeanette Hellgren Kotaleski | KTH Royal Institute of Technology, Stockholm, Sweden
Jörg Conradt | KTH Royal Institute of Technology, Stockholm, Sweden
Pawel Herman | KTH Royal Institute of Technology, Stockholm, Sweden
Erik Fransén | KTH Royal Institute of Technology, Stockholm, Sweden